Added 32x32 favicon

Added 32x32 favicon
    favicon.ico   (+)
Added .htaccess: redirection, caching, compression

Added .htaccess: redirection, caching, compression
     .htaccess   (+)
Added robots.txt

Added robots.txt
    robots.txt   (+)
Updated CodeIgniter configuration

Updated CodeIgniter configuration
    application/config/autoload.php
    application/config/config.php
    application/config/routes.php
Updated base CodeIgniter controllers and models

Updated base CodeIgniter controllers and models
What's missing now is the proper views, and also the css.
    application/controllers/articles.php    (+)
    application/controllers/errors.php      (+)
    application/controllers/pages.php       (+)
    application/controllers/welcome.php     (-)
    application/models/article_comments.php (+)
    application/models/article_model.php    (+)
    application/models/globals.php          (+)
    application/models/navbar_model.php     (+)
    application/views/errors/404.php        (+)
    application/views/footer.php            (+)
    application/views/header.php            (+)
    application/views/pages/articles.php    (+)
    application/views/pages/contact.php     (+)
    application/views/parser/code.php       (+)
    application/views/parser/latex.php      (+)
Forgot system/core!

Because of a silly entry in my local .gitignore file, I forgot to add
CodeIgniter's system/core directory. Woops!
    system/core/Benchmark.php   (+)
    system/core/CodeIgniter.php (+)
    system/core/Common.php      (+)
    system/core/Config.php      (+)
    system/core/Controller.php  (+)
    system/core/Exceptions.php  (+)
    system/core/Hooks.php       (+)
    system/core/Input.php       (+)
    system/core/Lang.php        (+)
    system/core/Loader.php      (+)
    system/core/Model.php       (+)
    system/core/Output.php      (+)
    system/core/Router.php      (+)
    system/core/Security.php    (+)
    system/core/URI.php         (+)
    system/core/Utf8.php        (+)
    system/core/index.html      (+)
Added images

Added images
    .gitftpignore                       (+)
    images/arrow.png                    (+)
    images/background.png               (+)
    images/background_repeat.png        (+)
    images/comment_icon2.png            (+)
    images/dark_fish_skin.png           (+)
    images/email.png                    (+)
    images/nav_buttons.png              (+)
    images/source/buttons.xcf           (+)
    images/source/swl_logo_sm_light.xcf (+)
    images/swl_logo_sm_light.png        (+)

Mentioned subtlepatterns in license.txt
Remind myself to add this also in the css using this file.
Added SwarmingLogic, custom css

Added SwarmingLogic, custom css
    css/base.css
    css/style.css   (+)
Updated SyntaxHighlighter brushes

Updated SyntaxHighlighter brushes
Also dadded my own for Lisp.
    sh/scripts/shBrushBash.js
    sh/scripts/shBrushCpp.js
    sh/scripts/shBrushLisp.js           (+)
    sh/styles/shCore.css
    sh/styles/shThemeSwarmingLogic2.css (+)
Customized CodeIgniter captcha image creation

Customized CodeIgniter captcha image creation
    system/helpers/captcha_helper.php
Added more article features

Added more article features.
Article date, comments and sidebar.

Also: The file images/captcha/.empty is there for git to create the directory
'images/captcha', which is required for the catcha system to work.

    application/views/article_date.php        (+)
    application/views/comments.php            (+)
    application/views/sidebars/sb_article.php (+)
    images/captcha/.empty                     (+)
Added RSS Feed Creator

Added RSS Feed Creator
    application/controllers/feed.php (+)
    application/views/feed.php       (+)
    application/views/header.php
Added Javascript Files

Added Javascript Files
JQuery, scrollspy, and some custom stuff.
    application/views/footer.php
    application/views/header.php
    javascripts/jquery-1.10.1.min.js (+)
    javascripts/scrollspy.js         (+)
Utility page for loading github gists

Allows loading files from external domain (gist.github.com)
For usage with asynchronus loading with JS.

    gist.php   (+)
Set SyntaxHighlighter to use custom CSS

Set SyntaxHighlighter to use custom CSS
    application/views/parser/code.php
Updated README to mention jQuery framework

Updated README to mention jQuery framework
    README.md
Refactored some javascript functions.

Refactored some javascript functions.
    application/views/footer.php
    javascripts/custom.js
Added common util functions for articles.

Added common util functions for articles.
    application/controllers/articles.php
    application/views/common_article_util.php   (+)
Added folder-info.txt files.

Added folder-info.txt files to ./analytics/ and ./images/captcha/

They explain the purpose of the folders, that would be otherwise empty on a
clone of the repository.

    analytics/folder-info.txt      (+)
    images/captcha/.empty          (-)
    images/captcha/folder-info.txt (+)
Improved code highlight header includes

Improved code highlight header includes
If no languages are specified, it doesn't add anything.
    application/views/parser/code.php
    application/views/parser/latex.php