First pass copy of the Wig Writer to make a Wave writer.
Updates to WaveFileThread - still requires code for Gaussian fitting.
Merge pull request #2 from dfornika/dev/dfornika/issue/1

Create tmp directory within repository to dump temporary output to.
Initial commit of mongoAPI. It takes project name and extracts betas,
expressions and design. Right now, it inserts value from probe1 of
sample1 into mongoDB.
Merge branch 'master' of https://github.com/apfejes/epigenetics-software
Updated read_data to include the probenames when writing to .txt file.
Uploaded microarray data (generated from read_data.R script) from 3
projects and probe annotation for testing
Initial commit of two modules and unittest used by mongoAPI.py
Removed the microarray: I realized github thought I coded 2 million
lines.
More or less functioning best fit threads and map store.  Accuracy of
best fit not yet tested.  New Parameter object.  Wig and Wave file
Threads
Merge branch 'master' of
http://apfejes@github.com/apfejes/epigenetics-software.git

Conflicts:
	Epigenetics/Utilities/WigFileThread.py
Wave File writer now has same mechanism as Dan proposed for use with the
wig file writer.
Rename MapDecompingThread to MapDecomposingThread
adding gitignore *.pyc
Removing pyc files.
First unit test for MapDecomposingThread
Mostly working code, removing some bugs in the decomposition. Some
formatting cleanup after discovering how badly conventions were being
abused.