Renamed fake tests to something else. Some versions of the test
environment assume that every calss which finishes for Test is a JUnit
test while the ones renamed in this commit are not.
Changing hasBehavior() call in ComponentType to hasDynamics()
Minor change to MinimalMessageHandler to allow very minimal logging
Update to 0.9.4
Puting back in "this" & "parent" in path search for Component, see #19
Adding JarResourceInclusionReader to read lems definitions from files or from selected paths within jar files
Retested FileResultWriter, updated Sim.java to ensure correct number of points get written to file, i.e. one at 0, dt, dt*2 .. duration.
Put back in attributes reportFile & timesFile on Target element, to enable saving these in neuroConstruct generated code.
Only usage of these is in org.lemsml.jlems.io.IOUtil.saveReportAndTimesFile(sim), i.e. kept out of core.
Added some tests on version number usage
Updated to v0.9.5
Correctly updated version nums this time
Changes to facilitate getting nml/lems files from jar in JarResourceInclusionReader
Tests to ensure consistent use of units in VersionTest
Update to v0.9.5.1
Remiving extra system.out.println
Updating example1 to format friendlier to current version of PyLems
Updating example1.xml to use the <Simulation> (a.o.t. the <SimulationSet>) element,
since this is the preferred form for the NML2 examples and the older form seemed to
be broken in the latest pylems
Adding example of iaf cell with regimes which seems to be initialised in refractory regime, not integrating
Minor update to pass mvn test
Minor updates to improve flattening of components
Update to v0.9.5.2
Main class to run regimes example.
Copy 'initial' property of ComponetRegimes when making shallow
copies (test_regime_iaf.xml initial regime problem).
Removing generation of plain model from the master branch
Merge remote-tracking branch 'origin/master' into api

Conflicts:
	src/main/java/org/lemsml/jlems/core/sim/Sim.java