Extend simNGS test to generate 100 simulated reads from each organism and spike an ecoli read on each of them
Adding license, solves issue #68 [ci-skip]
Basic couchdb view on contamination screening
ignore simNGS downloads
Introduced begin-end timestamps, might change to elapsed or just 'timestamp' later on instead
Time deltas in Javascript to fetch runtime
Take away arbitrary sub-second resolution
Perl local::lib install of fastq_screen finished
Submitting fastq_screen results to couchdb on test teardown
Adding fastqscreen as standard test on travis...brace for impact since I am testing this in MacOSX instead
Stray blank line for method decorator removed
Do what the perl warning says about local::lib... worked locally, not in Travis
Adding perl Include next to the actual fastq_screen cmdline instead
Forcing install of local::lib, for some reason it does not show up in ~/perl5/lib/perl5
Cleanup on perl, does travis install local::lib properly? Add bowtie2 too, thanks @guillermo-carrasco
Update packages so that it can find bowtie2 in scilifelab PPA
Install lib::local and cpanminus system wide, only in Travis
Works with installed/packaged perl local-lib, removing debug Travis-CI statement [ci-skip]
Merge pull request #73 from brainstorm/master

Extend simNGS test to generate 100 simulated reads from each organism and spike an ecoli read on each of them
Added fastq_screen_db parameter to the config loader