Added some plotting options for CN survival plots.
Merge remote-tracking branch 'upstream/master'
Merge remote-tracking branch 'upstream/master'
More memory efficient copy number calling and preliminary support for homozygous deletions.
Merge remote-tracking branch 'upstream/master'
Merge remote-tracking branch 'upstream/master'
Merge remote-tracking branch 'upstream/master'
Merge remote-tracking branch 'upstream/master'
Build 2.5.2
Bunch of affy 2.0 and 2.1 chips added to norm-affy-gene
Merge branch 'master' into affy_20
bioMart support added to norma-affy-gene
Made biomMart annotation in norm-affy-gene optional
new CRLMM installed under R.2.15 for affy/illumina SNP chip analysis
Merge branch 'master' into affy_20
SNP microarray manuals updated
Merge remote-tracking branch 'upstream/master'
Norm-affy-gene manual updated
Merge branch 'master' into affy_20
norm-affy-gene manual updated more