Dependency JS (jQ, jQUI etc.) are better to go in the header.
The custom JS should go in the footer (lazy-load).

Also, as I see it - you've already included jQ (from non-recommendable) Google CDN in the header section.
WHY AGAIN?

@nvcHilary we need some code cleanup, proper indentation, modularizing & block-comments. Get on it if you have time.