Include all options on incremental restore

Some options were being ignored on an incremental restore (i.e.
transforms, batch size).
Add MaxStepsForTransformScript option to smuggler

Add a command line parameter to specify max steps for Jint, similar to
the config setting Raven/MaxStepsForScript
Formatting
Fixing test after merging files
Fix a bug where we missed the index metadata in the transformer. We should have there the index's metadata in addition to the parent document one
Add logging for database starting/started and shutdown a database start and end