MANTA-19 change method plumbing to allow for more than one SVCandidate to be found/supported by a single read pair
MANTA-19 initial large deletion incorporation
MANTA-19 Improve breakend candidates created from cigar deletions
MANTA-19 add new unit test for edit_bam_cigar, update unit tests to link libbam
MANTA-19 fix name of data struct
MANTA-19 add new unit test for SV scanner
MANTA-19 comment/rename cleanups added while debugging
MANTA-19 Add additional node/self-intersection tests
MANTA-19 additional comments, var renames, debug output
MANTA-19 close gcc 4.1 warning
MANTA-19 consolidate repeated node intersection logic
MANTA-19 Add test case which recreates MANTA-19 failure and corresponding fix
MANTA-19 Add tests, debug info and fix for clean region issues

issue occurs when cleaning regions when multiple locus nodes fall into the cleaning region
MANTA-19 add additional checkState check to prevent future graph cleaning issues
MANTA-19 GSC debug assist
MANTA-19 patch the candidate generation process for bam records with deletion cigars
MANTA-19 update data debug output
MANTA-19 fix evidence filter details
MANTA-19 fix for remote size in gsc
MANTA-19 assorted doc/config tweaking