Do not use nested quotes.
Improved skmake.rb
Generalize twobitencoding_mapoffset func to all encseqs
Replace template by template_code, as template is C++ Keyword.
Added mussing type cast required by C++ compiler.
Parse 'combined space peaks' numbers.
Possible output suftab in compressed form
Output bytecompressed suffix table to file with suffix .sufc.
Always compress to uint64_t and check number of written words.
Write header of compressed suftab.
Map the compressed suffix array.
Use fread to read the value from the compressed suftab.
Uncompress the suftab and check if order is correct.
cosmetics
reads2twobit: handle case q[255]=@ in invalid read
readjoiner: fix handling of mates of contained
rdj prefilter: handle eqlen->varlen->invalid->eqlen
clean up userdata handling in GtGenomeNode
add gt_hash{map,table}_new_no_ma()
make global spacepeak counter MA-independent