Working on small bug fixes in the Oozie workflow engine.
Trying to correctly construct the local path
Trying to construct the right params to ProvisionFiles
Working on improvements to the oozie backend, things were slightly broken and remain unstable for now.
Working on the docs, adding in Oozie information
Fixed a problem with an oozie object.  Also, shouldn't all our apps point to the test DB by default since that gets setup in the maven build process!?
I added code to correctly pass memory requirements to the Oozie engine (workflow.xml) and also added some code that replaces the workflow_bundle_dir variable in ini files. This really needs to be fleshed out to ensure all magic variables are handled correctly.
This is a very simple directory-bulk S3 uploader.
Merge branch 'develop' into feature/SEQWARE-1400_oozie_improvements

Conflicts:
	seqware-pipeline/pom.xml
Ran into compilation issue without fixing the aws jar version
Some pom.xml dependency changes were needed due to some triggered bugs in junit 4.8.2 dependency inherited from Hadoop.
Merge pull request #41 from SeqWare/feature/SEQWARE-1400_oozie_improvements

Feature/seqware 1400 oozie improvements