Update freebayes to latest version with bug fixes for out of order issues
Ensure MuTect downloaded file is appropriately named
Merge branch 'master' of https://github.com/chapmanb/cloudbiolinux
Ensure sorting of downloaded UCSC genomes in karyotype order to enable compabitility with GATK tools
Add dbSNP preparation and download for mouse mm10 genome. Work towards automated GATK-based variant calling with mm10
Expose top level target to build homebrew packages. Enables easier testing for additional inclusion of homebrew recipes for tools
Bump TopHat to the latest release
Merge branch 'master' of https://github.com/chapmanb/cloudbiolinux
Provide version checking for gemini installation, doing update in place when appropriate
Merge branch 'master' of https://github.com/chapmanb/cloudbiolinux