fixed bad tile warning in predictor
pre-populate read_length from filter file
read length should already be set now - let us die if we find an unexpected read length
Merge pull request #32 from dkj/master

Bugfix - fail flag not set on forward read when first read in lane had fail inducing indels in the reverse read
Merge branch 'wtsi-npg-master' into devel
Merge remote branch 'js10-github/master' into devel
Merge remote branch 'js10-github/master' into devel
Merge branch 'devel' of github.com:wtsi-npg/pb_calibration into devel
Merge pull request #37 from srl147/devel

Devel
Merge pull request #38 from srl147/devel

bug fix when reading filter files with no data
Merge branch 'devel'

Conflicts:
	src/spatial_filter/spatial_filter.c
Merge pull request #40 from srl147/devel

removed leading v from usage version message
Merge pull request #41 from wtsi-npg/devel

Devel
merge follwoing conflict resolution
merge following conflict resolution
fix incorrect comment regarding return value of makeSurvTable
Merge pull request #42 from dkj/devel

Fix dodgy merge resolution
remove vestigial pread_bytes - has already been refactored into shared/cif.c
Merge pull request #43 from dkj/devel

Comment fix and vestigial code removal
moved flagstat after spatial_filter