we need a own .loc file for the twobit files
we need a own .loc file for the twobit files
first version of tool_dependency definition
adopt wrappers to use the dependencies from the toolshed
add dependencies
Merge remote-tracking branch 'upstream/master'
move test data to the galaxy repository
add ucsc tools as dependency
add testcases, they may not work due to galaxy limitations
white space fixes
remove unused dependencies
fix for -bs option
- style fixes
- possible SGE bugfix with trailing ';'
- mark -p as TODO, Galaxy fix is in preparation, until that we need to hardcode it
Merge pull request #2 from bgruening/master

Add Tool Shed integration