Merge branch 'release/0.158' into develop
fix file stringify in test and return 1 for success in various steps
new steps, pipeline and test for sga fastq preparation. avoids multiple submissions per dataelement to hopefully stop killing the submission table
do not fall over in the signal watcher if for some reason there is no stderr_file
updating vrtrack with hipsci expression analysis
updates to hipsci import for penncnv and quantisnp
bcf gains yet another header line; test altered so num of header lines does not matter
Merge branch 'develop' of /software/vertres/git/origin/vr-pipe into develop
testing database for hipsci genotyping
initial check in for quantisnp
sorted merge conflict
initial commit of penncnv steps
initial commit of quantisnp steps
search() instead of get() in transaction to avoid possiblity of extraneous rows being locked
Merge branch 'develop' of /software/vertres/git/origin/vr-pipe into develop
only lock rows during get() if in create mode
Merge branch 'develop' of /software/vertres/git/origin/vr-pipe into develop
Merge branch 'develop' of /software/vertres/git/origin/vr-pipe into develop
Merge branch 'develop' of /software/vertres/git/origin/vr-pipe into develop
removing 0.158 db upgrade scripts