Merge pull request #2 from Simmetrics/develop

Smith waterman gotoh segfault fix.
Fixed Windows compilation problem using MinGW by implementing a custom strtok_r
Merge pull request #3 from Simmetrics/master

Update...
Fixing compilation issues - try#: 2
Fixing scripts try#: 3
MOAR cross platform fixes...
Merge pull request #4 from Simmetrics/master

Cross platform fixes...
Compilation stuff...

Just a note...
Added Metaphone algorithm implementation by Kuhn
Merging conflicts
Merge branch 'master' of https://github.com/Simmetrics/libsimmetrics
Updated gitignore and added Author...
Fixed gitignore and added Nick as Author...
Removed executables
Removed accidental folder changes...
Remove eclipse project files.

Project settings are workspace specific and should not be tracked.
Ignore project specific settings
Add new blank line and end of configure.ac.

see http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=385720
  m4 crashes with 'm4: INTERNAL ERROR: recursive push_string'

  It seems that the problem is reproducible with every automake project
  that has a) AC_OUTPUT on the last line in configure.ac and b) no
  terminating newline on that line. Adding a newline will make the
  problem disappear.
Remove generated files.

Use autoreconf instead to generate configure etc.