[ADD] add galGal3,4 mm9,10 reference path
[FIX] chicken reference to galGal4, show ref path message
[MOD] show unzip time
[ADD] finish commenting, select proper # of process, add --ssd, --remove-fastq option
[MOD] change out_dir in Project
Merge branch 'tophat' into develop
[Tophat] fix minor functions