Fixed readme.
Removed useless class.
Changed counter to AtomicLong instead of long to avoid concurrency issues.
Added first version of bytecode manipulator.
Updating java manipulation agent.
Updated execution framework.
Bytecode manipulator in java agent now properly inserts annotations for class dependencies for every class.

I had originally not forced all bytecode to be java 1.5 or higher, meaning that many annotations were lost.
Fixed imports and made it so that the bundle doesn't import robusta annotations anymore. The annotations must be delegated from the framework (they are currently in the Java agent jar).
Added printing information to commands.

Moved all commands into a new package to avoid split packages.

Made commands read Robusta annotations properly.
Added list of classes that are not working after bytecode field manipulation.

It's irrelevant because we are using annotations now anyway.
Nothing but the log...