Create trunk copy
Fix problem with compiling without curses.
 * Merge from branches/dev/
 * all future development will happen here at trunk/
 * merge from branches/dev/
 * all future development will happen here
 * samtools-0.1.1-19
 * fixed a bug in "merge" command line
update documentation and ChangeLog
add a script to convert novo alignment to SAM
convert ZOOM to SAM
Script for filtering indel results
Release SAMtools-0.1.2
 * samtools-0.1.2-1
 * added flagstat command
 * samtools-0.1.2-3
 * fixed a bug in generating GLFv2 for indels
 * improve flagstat report a little bit
Pass LIBS to recursive targets to facilitate building at Broad.
fixed a potential memory problem in indexing
fixed a bug in generating tag AM
 * output max mapping quality in indel line
 * samtools-0.1.2-6
 * improve indel caller by setting maximum window size
 * samtools-0.1.2-7
 * fixed a minor bug in flagstat
 * samtools-0.1.2-7
 * fixed a bug in fixmate: SE reads are flagged as BAM_FMUNMAP
 * move indel_filter.pl to samtools.pl