Exstended IdMapper to log all exceptions
Added a method to log and write all messages.
Also allows System.out to be uses for debugs that can later be found and removed
Method for finding config files including log4j
(currently empty) property files
Added readme files
Added in commons-cli dependency
Merge branch 'feature/fixedMavenBuild' into feature/strickterDataSource
Merge branch 'feature/strickterDataSource' into feature/SplitBioDataSource
Merge branch 'feature/SplitBioDataSource' into feature/logger

Fixed Conflicts:
	pom.xml
Extends basic tests by starting logger and adding report method