Huge rewrite to implement correctly PDB files
Fixed some bugs

* Handling pdb files in a different way inside Gromacs.cpp
* Fixed some problems with Pdb parsing
* Deleted useless commented piece of code
* Protein::getAtomByIndex loops inside pResidues instead of pAtoms. Should avoid possible memory crashes
* I made a conceptual error lots of time ago: Protein::type should be char[4] instead of char[5] null teminated. Leaving as it is (for now), however copies from/to string must consider this.
Missing Protein copy parameter for Pdb constructor
Fixed "type" problems -- again
Fixed forwarding bug
Added support to chainId in Pdb
Huge rewrite to implement correctly PDB files
Fixed some bugs

* Handling pdb files in a different way inside Gromacs.cpp
* Fixed some problems with Pdb parsing
* Deleted useless commented piece of code
* Protein::getAtomByIndex loops inside pResidues instead of pAtoms. Should avoid possible memory crashes
* I made a conceptual error lots of time ago: Protein::type should be char[4] instead of char[5] null teminated. Leaving as it is (for now), however copies from/to string must consider this.
Missing Protein copy parameter for Pdb constructor
Fixed "type" problems -- again
Fixed forwarding bug
Added support to chainId in Pdb
Merge branch 'full_pdb' of dodomorandi.no-ip.biz:/git/pstpfinder into full_pdb
Huge rewrite to implement correctly PDB files
Fixed some bugs

* Handling pdb files in a different way inside Gromacs.cpp
* Fixed some problems with Pdb parsing
* Deleted useless commented piece of code
* Protein::getAtomByIndex loops inside pResidues instead of pAtoms. Should avoid possible memory crashes
* I made a conceptual error lots of time ago: Protein::type should be char[4] instead of char[5] null teminated. Leaving as it is (for now), however copies from/to string must consider this.
Missing Protein copy parameter for Pdb constructor
Fixed "type" problems -- again
Fixed forwarding bug
Added support to chainId in Pdb
Merge branch 'full_pdb' of dodomorandi.no-ip.biz:/git/pstpfinder into full_pdb