JobGenerator creates conf file for different patterns instead of creating
command-line options. I misunderstand your question?

As long as you use the conf file from JobGenerator, it should be overridden
correctly even if without overridden it.


On Sat, Nov 16, 2013 at 6:25 PM, Jake Biesinger <notifications@github.com>wrote:

> In
> genomix/genomix-driver/src/main/java/edu/uci/ics/genomix/driver/GenomixDriver.java:
>
> > @@ -325,6 +341,13 @@ public static void main(String[] args) throws NumberFormatException, HyracksExce
> >          GenomixJobConf conf;
> >          try {
> >              conf = GenomixJobConf.fromArguments(args);
> > +            String pathToConf = conf.get(GenomixJobConf.CONF_INPUT);
>
> Does your JobGenerator create all the command-line options for the test
> cases? Are there any that will be incorrectly overridden when they
> shouldn't in your generator script?
>
> —
> Reply to this email directly or view it on GitHub<https://github.com/uci-cbcl/genomix/pull/61/files#r7711355>
> .
>



-- 
Best Regards,

Anbang Xu