Gain about a 1% speedup.
Get another 5% or so by speeding up re-mapping.
Merge branch 'master' of github.com:bredelings/BAli-Phy
Merge branch 'master' of github.com:bredelings/BAli-Phy
Virtualize add_parameter( ).
Remove unused Model_Notes parameters from program.C routines.
Add note.
Give an error message if trying to set a non-existent parameter by name.