reports init pass
Test-ready impl of new study report
move non-java files into resources
Fix JNDI name for db
Expose new study report via new plugin
Add all-studies report to ws and client.
Use default study report output file name instead of writing to stdout.
Better help doc.
Add file_attributes to study report. Remove table aliases from root study query to aid where-clause insertion.
Add doc string to study report plugin.
Handle invalid study title.
re-throw runtime exceptions unmolested.
Rename study report plugin.
Refactor study reporter; handle file/writer cleanup.
Merge pull request #54 from SeqWare/feature/reports

Feature/reports
Merge branch 'develop' into feature/SEQWARE-1242_integration_tests