Small bugfix in BwaAlign.sh, added readgroup line to cmd.
Made a start with CollectBamMetrics.sh protocol
Small bugfixes Lifelines genotypedata pipeline. Updates on new in-house NGS pipeline.
Fully functioning pipeline incl. picard metrics.
Implemented target realignment in in-house pipeline.
Merge pull request #96 from freerkvandijk/master

Implemented new protocols in-house NGS pipeline