Archive of the 0.9-2 release tarball
	* R/model-mkn-multitrait.R, R/model-musse-multitrait.R: restore
	'pars.only' argument to multitrait function, as this is useful for
	priors.
bib/studies.bib: Typo in Boucher-2012 entry
diversitree/man/mcmc.Rd: Clarify default priors.
Added shorebird profile plot (previously mcmc output was not used!)
Added Scott et al. 2012 and deleted generated studies.html file
stationary.freq.classe() now always returns vector

Small change so that special case doesn't return a scalar.
Typo fixed.
ClaSSE simulator works.
New function projection.matrix.classe().

This function is not exported, but it's handy to have access to it when
planning simulation tests.
It was simply pulled out of stationary.freq.classe.ev()
Merge pull request #1 from eeg/classe-misc

small stuff for classe
Merge branch 'master' into classe-sim
Unit tests for classe simulator.

Also checked that this sim code produces trees identical to those from
last month's testing.
GeoSSE simulator works.

It's actually just a wrapper function for the ClaSSE simulator.  But it
works as one would expect, with geosse parameter names and states, via
tree.geosse() or trees(type="geosse").

The helper function pars.ge.to.cl() converts geosse pars to classe.pars,
but it is not exposed.
Updated make.geosse help page.

Now uses the simulator.  Consequently, data/geosse.R is now gone.
Added Claramunt-2012 (Am Nat)
Merge pull request #2 from eeg/classe-sim

classe simulator


Simulate trees for classe, and as a byproduct, for geosse. Includes the usual tree functions, help pages, unit tests
Merge remote-tracking branch 'github/master'
Update make.classe.Rd to use GeoSSE simulator.
Added Avaria-Llautureo-2012-e34654 and Syme-2012
Added Zimkus-2012-e35118