Created and added arguments to parse and defaults as specified in the wiki for CONCOCT
added output class, reading in composition and coverage, generate features for composition
Restructured to CONCOCT script
Ignore adapted to new structure
Collect returncode correctly, test for nonzero error code finished
Fixed wrong argument name in argument parser
Random data to run tests on
Real clustering made in integration tests, failing output directory creation
Added tests for all output files creation
Tests for creation of unique output directory if given exists
init file for concoct module
pca and first Gaussian mixture, not finished
first version, need to test
finished, untested
Merge branch 'argument_parsing'
fix output, and parameter error
removed percentage sign from pca
make more readable
Files do not pass
Pedantic 80 characters per line maximum edit