Add support for reading in multiple POLCOMS NetCDF files. This should remain backwards compatible with single file names as input
Propagate the changes from get_POLCOMS_tsobc.m to this file to support reading in multiple NetCDF files and concatenating their data along the time axis. This also includes a section to replace the times in the restart file with an arbitrary time period, but this is commented out. This is useful if the restart file does not belong to the same time period as the data and you essentially want the restart file as a template only
No idea what this change is all about, but I have not materially changed anything in this file
Minor formatting changes
Better formatted comments
Add script to take MyOcean daily mean NetCDFs and interpolate temperature and salinity at the open boundaries. This is almost identical to the get_POLCOMS_tsobc.m script, but the two file formats are sufficiently different that I have not yet been able to create a generic function to read both. One day...
Fix the vertical interpolation of POLCOMS derived temperature and salinity profiles. This is because POLCOMS starts its vertical layers from the seabed whilst FVCOM from the sea surface
Fix the vertical interpolation of POLCOMS derived temperature and salinity profiles. This is because POLCOMS starts its vertical layers from the seabed whilst FVCOM from the sea surface
Fix the vertical interpolation in two ways:

1. The depth values I was extracting from the variable bathymetry weren't suitable (they lacked the vertical intervals necessary for the vertical interpolation).

2. POLCOMS vertical structure starts at the seabed whereas FVCOM starts at the surface. As things stood, the vertical profiles were being interpolated upside down.

Other miscellaneous changes to remove variable names based on POLCOMS (pc*).
Undo the depth profile inversion since using the depths to interpolate means the values are reordered if necessary
Helper function for interp_AMM2FVCOM.m and get_AMM_tsobc.m to do the reading in from the POLCOMS-ERSEM AMM domain mean daily NetCDF files
Remove the reading in of the NetCDF and create a new function to do that (get_AMM_netCDF.m)
Improve the short description
Move the interpolation function to somewhere more sensible (the utilities directory)
Helper function to do the interpolation of the regularly gridded POLCOMS-ERSEM daily mean model output onto the FVCOM vertical grid
New function based on the old replace_FVCOM_restart_vars.m but with more general reuse in mind. Instead of writing to NetCDF directly, this functino now exports the interpolated variables to the MATLAB mesh object and the NetCDF writing has been exported to write_FVCOM_restart.m
Code taken from replace_FVCOM_restart_vars.m which did the cloning of the restart NetCDF file and replaced the requested variables with interpolated versions. This makes it easier to generate restart files using a range of sources
Function removed and split into several more flexible functions (interp_AMM2FVCOM.m, grid_vert_interp.m, get_AMM_netCDF.m and write_FVCOM_restart
Remove the commented out NetCDF section at the end of the file (work which is now done by write_FVCOM_restart.m in create_files.m)
Fix variable name clash between the data read in from the NetCDF file and the data supplied to the function (i.e. the interpolated data)