Starting the consolidation process
Major overhaul. Attempting to merge in wrairnaming, wrairdata and wrairanalysis projects
Documentation. Yay\!
more or less working
Fixed the gap image generation so it does not require segno at the end. Now it accepts either segno or segment name at the end of a reference name
Slowly getting migrated to using the config obj settings
Malformed settings.cfg
wrairdata is very close to 100% config utilization
Incrementing minor version number
Adding tags to version
More version fun
Added region into sff file names as samples could be run in >1 regions
Initial variant_lookup
Fixes: link_reads does not attempt to use demultiplexed directory if it exists in current directory
Working my way through tests
Few fixes for config settings stuff
Small error fixes
Extensions fixed
Really need to pay attention to what I do
Supported file extensions are only fastq|abi|sff right now
Added -numn 0 to mapSamples to deal with sanger data