Removed Blah::Module
Merge branch 'master' of github.com:mptrsen/Orthograph
Merge branch 'master' of github.com:mptrsen/Orthograph
Merge branch 'master' of github.com:mptrsen/Orthograph
Merge branch 'master' of github.com:mptrsen/Orthograph
Making the Exonerate module work
Tagged beta2
Updated README, cleaned up code a little
Merge branch 'master' of github.com:mptrsen/Orthograph

Conflicts:
	orthograph-analyzer
Removed blastdb_path from database, simplified config parsing with defined-or (//=)
Merge branch 'master' of github.com:mptrsen/Orthograph
More robustness to mysql functions, with timeout
Fixed syntax errors and shit
Added finish message to reporter output
See this through
Added subroutine for getting individual tables per species