Added LOGGERs
Added EQProposals and used it in place of EQStatementProposals
added a normalizeModifierCharacter function in
CharacterAnnotatorChunked. This handles only cases of modifier
characters apprearing at the beginning of a character statement
set 'whole organism' placeholder to 'whole_organism' throughout
parsing-gui and phenoscapeII projects. Always access the variable
through ApplicationUtilities.getProperties().
Fixed a few bugs related to entity searching and proposal collecting.
Added postcomposition with quality in StateStatementParsing.
Continue adding debugging messages in other parts of code and searching
for bugs.
Merge branch 'dev' of https://github.com/phenoscape/phenoscape-nlp.git
into dev

Conflicts:
	phenoscapeII/src/outputter/EQPerformanceEvaluation.java