Some Issue #44 fixes
- Separated log markers from the standard output
- Markers append to the log without tee,  so should be in the correct
locations.
- Improves logging output per Issue #36
- Fixes the log markers for log parsing in future error detection for
issue #2
Issue #36
- More cleaning up of output and logging
Issue
Issue #44
- Fixed log marker placement by taking them out of standard output and
not using tee (separate output for log)
Merge pull request #47 from philstark/Issue_44

Issue 44