Remove requirement for bcbio_system at the command line, detecting from automated install location if not specified. Improve documentation for getting started running the pipeline
Move whole genome example above exome since it runs directly without additional novoalign license
Bug fix for merging BAM files with bamtools: sort after merge since order is not maintained and avoid duplicates from noanalysis by better subsetting with bedtools
Bug fixes: correctly detect versions on GATK nightlies (#84) and allow skipping of incorrectly configured coverage without dropping samples
Release v0.7.1 and include better documentation on configuring