suzerain: improve manual.gold output handling

Now always records a single unified output which is
always displayed when run directly, but the all.sh
script makes things shaddup unless they break.

git-svn-id: https://svn.ices.utexas.edu/repos/pecos/suzerain/trunk@42613 0bd85f0b-c151-43b9-a1e9-27231104551f
suzerain: #2305 add in-progress check.sh script

Currently named TODO.sh so that ../all.sh doesn't invoke it.

git-svn-id: https://svn.ices.utexas.edu/repos/pecos/suzerain/trunk@42614 0bd85f0b-c151-43b9-a1e9-27231104551f