Bug fix filtered trityper genotype reader and better testing.
Genotype data implements closable
Fix spelling mistake
Refactoring, testing and fixing variant filter
Udpate pom. Should replace local jar but needs to be tested
Merge pull request #61 from PatrickDeelen/master

Bug fix filtered trityper genotype reader and better testing.
Refactor of genotype reader
Merge pull request #62 from PatrickDeelen/master

Refactoring, testing and fixing variant filter
Fixes in new DoubleMatrixDataset

Casting fixes
Changed output of normalizer during PCA step.
Updated pom

Now there is no need anymore for installing local jars.
Added a readme.md for the eQTL mapping software
Removed install-local-jars and changed main README.md
Merge pull request #64 from Bonder-MJ/master

Updates in new Matrix, additions in PCA output, updated pom and changes in Readme's
Added creating of test data to readme.md
Bugfix and findbugs fix
Merge branch 'master' of https://github.com/PatrickDeelen/systemsgenetics.git
Merge pull request #65 from PatrickDeelen/master

Genotype aligner readme + fixes aligner
Excluding variants with maf of 0
Imports and comments