add shrimp_color_space mapping tool with functional test data.
add a new datatype called csfasta.
Basic wrapper for standalone TMHMM 2.0 (protein transmembrane predictions)
Basic wrapper for standalone SignalP 3.0 (signal peptides)
Adding four protein test case for SignalP and TMHMM
Split input to avoid 4000 protein limit in SignalP 3.0
Use multiple processes for SignalP wrapper
Use multiple processes for TMHMM wrapper
Base temp files on output filename (so won't clash)
Stricter error checking for SignalP, more sensible temp filenames
Add max sequence length check (otherwise get cryptic 'error running HOW' from SignalP)
Handle protein truncation in SignalP wrapper
Rename folder seq_analysis to protein_analysis
Fix error handling for when there was no output file
Include binary requirements in SignalP and TMHMM wrappers
Fix human error in ReST formatting of output table
Add README and LICENSE for SignalP and TMHMM wrappers
./run_functional_tests.sh -sid XXX not working for me
Update README file with working unit test -sid argument
Add version number to seq_analysis_utils.py
Line wrapping in README file