recovered default arguments
removed an unnecessary env. variable
don't forget to remove another line
just formatted. never use TAB
detached the HDF5 writer from GillespieSimulator
save should be a member function of World, but not of Simulator
updated the HDF5 format for CompartmentSpace
extended a sample for gillespie
detached the HDF5 writer from EGFRDSimulator
save fundamental attributes for CompartmentSpace and ParticleSpace
moved HDF5Writers into core
detached the HDF5 writer from ODESimulator
added functions to create degradation and synthesis rules.
save the internal state of RandomNumberGenerator
save the rng internal state
detached the HDF5 writer from SpatiocyteSimulator
save space's members into HDF5
Voxel should have its own id
removed unnecessary files
merged master