Changed Eclipse formatter preferences: 1) Use tabs for indentation (I
think this is what we've been using), and 2) Don't format header
comments because it makes them less readable.
Ran cleanup on AtomCache; this time didn't sort members.
Also don't add 'final' everywhere. I think that's probably a little overzealous and intrusive.
Ran more conservative cleanup on AtomCache.
Missed Andreas's recent changes.
Merge pull request #40 from dmyersturnbull/master

Changed Eclipse cleanup and formatter preferences to better reflect what's currently in Biojava.
Merge remote-tracking branch 'updates/master'