Attempt to fix bug in nginx template introduced in my last commit.
Clean up gsl and samtools libraries included with cortex_var, rebuilding from scratch on machine architecture. Thanks to Glen Otero for problem report
Update scikit and python machine learning libraries
Include mpich2 for ray compilation on scientific linux. Thanks to Glen Otero
Update cloud-init scripts and clean up additional ssh keys when preparing Ubuntu AMI
Improve python library install: use pip instead of easy_install and generalize code to find pip command
Require a minimum split size to avoid going below AWS limit. Thanks to Dale for problem report
Update ec2 boot script from latest mi-deployment
Clean up additional files in home directory from noisy programs
Revert ec2 bootscript. Accidentically pulled from old version. Sorry John
Handle bucket_url retrieval case where user data is None
Remap debian packages not available from latest ubuntu list. Thanks to Olivier. fixes #57
Fix VEP download problems under certain firewalls using FTP_PASSIVE. Thanks to Jeev for the problem report
Fix for canned responses to configure packages as they are being installed (postfix specifically)
Update GATK, Picard and snpEff to latest versions. Update GATK bundle downloads to latest 2.3 release.
Update pointer to installed genome libraries in new snpEff configuration files
Support flavor customization when installing CloudMan; remove tntnet server package when cleaning up an image
Merge branch 'master' of git://github.com/chapmanb/cloudbiolinux
Install development version of cloud-init package because of a bug in earlier versions of cloud-init and newer versions of boto, which prevented ssh access to a created instance
Merge branch 'master' of github.com:chapmanb/cloudbiolinux