Revise/add figures, revise text

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	modified:   fig/conediagram.pdf
	modified:   fig/conediagram.svg
	new file:   fig/figure_graphs_dims_nolines.pdf
	new file:   fig/figure_graphs_dims_nolines.svg
	new file:   fig/stochdynscheme.pdf
	new file:   fig/stochdynscheme.svg
	modified:   plos_header.tex
	modified:   plos_template.tex
	new file:   tex/authorsummary.tex
	new file:   tex/figures.tex
	new file:   tex/hadamardmethod.tex
	new file:   tex/marginalmapconstraints.tex
	new file:   tex/modeldescription.tex
	modified:   tex/table_sheaf_r1.tex
	modified:   tex/table_sheaf_r2.tex
	modified:   tex/table_sheaf_r3.tex
	modified:   tex/table_sheaf_r4.tex
	new file:   texcount.pl

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	System.out
	beamer.pdf
	beamer.pdf.off.info
	code/biopython/
	code/polytopes/c33.poly
	code/python/C4Vol.m
	code/python/C4Vol.out
	code/python/C4kcscript.pl
	code/python/basketkcscript.pl
	code/python/clawkcscript.pl
	code/python/figs/
	code/python/flagpolekcscript.pl
	code/python/fourgraphsdim.pdf
	code/python/fourgraphsdim.svg
	code/python/fourgraphsvol.pdf
	code/python/fourgraphsvol.svg
	code/python/fourhypergraphsdim.pdf
	code/python/fourhypergraphsdim.svg
	code/python/fourhypergraphsvol.pdf
	code/python/fourhypergraphsvol.svg
	code/python/graphdata.csv
	code/python/mycube.poly
	code/python/output/C33.data
	code/python/output/C33.vertices
	code/python/output/fourgraphs.dat
	code/python/output/fourgraphs.data
	code/python/output/fourgraphs.dimension
	code/python/output/fourgraphs.summary
	code/python/output/fourgraphs.volume
	code/python/output/hypergraphhasse.dot
	code/python/output/hypergraphhasse.pdf
	code/python/output/hypergraphhasse.tex
	code/python/output/hypergraphs.data
	code/python/output/hypergraphs.dimension
	code/python/output/ncyclevolume.dat
	code/python/overfourVol.m
	code/python/overfourVol.out
	code/python/overfourkcscript.pl
	code/python/overthreekcscript.pl
	code/python/overtwo.tri
	code/python/overtwoconnect.poly
	code/python/overtwoconnect.tri
	code/python/overtwoconnectkcscript.pl
	code/python/overtwoconnectv2.tri
	code/python/overtwoconnectv2kcscript.pl
	code/python/overtwokcscript.pl
	code/python/overtwotrifacets.pl
	code/python/respaceoutput.diff
	code/python/sep_python.sublime-project
	code/python/sep_python.sublime-workspace
	code/python/testkcscript.pl
	code/python/testtest.py
	code/python/tripodkcscript.pl
	code/python/twok2kcscript.pl
	code/scheme/
	fig/build/
	fig/figure_summary.djvu
	fig/fourgraphsdim.pdf
	fig/fourgraphsdim.svg
	fig/fourgraphsvol.pdf
	fig/fourgraphsvol.svg
	fig/fourhypergraphsdim.pdf
	fig/fourhypergraphsdim.svg
	fig/fourhypergraphshasse.pdf
	fig/fourhypergraphsvol.pdf
	fig/fourhypergraphsvol.svg
	fig/hypergraphrelationships.svg
	fig/plasmid_diagram.svg
	fig/sample_expression_data.svg
	fig/threecycclust.pdf
	fig/threecycuntrained.pdf
	fig/threehypergraphshasse.pdf
	fig/threehypergraphshasse.svg
	fig/threeleveldiagram.svg
	plos_template.aux
	plos_template.bbl
	plos_template.blg
	plos_template.fdb_latexmk
	plos_template.log
	plos_template.out
	plos_template.pdf
	ref/
	sep.sublime-project
	sep.sublime-workspace
	summary.pdf
	summary.tex
	tex/abstract.aux
	tex/abstract.fdb_latexmk
	tex/abstract.log
	ximo.tex