Merge pull request #104 from haaksmash/feature/massive_refactor

start of massive refactor
Merge branch 'develop' of github.com:jthemphill/claremontHvZ into feature/jeff_refactor
Merge branch 'feature/jeff_refactor' of github.com:jthemphill/claremontHvZ into feature/jeff_refactor
Fix prototype-templates path.
Delint with pyflakes.