added test status prints to logger
fixing sonar issues
Merge branch 'develop' of ssh://github.com/NLeSC/octopus into feature/scripting-cleanup
testing Generated annotation with sonar
fixing sonar issues in gridengine adaptor
fixing sonar issues in gridengine adaptor
fixing sonar issues
adding findbugs annotation jar to report false positives
. fixing some sonar issues
Fixing sonar issues
Merge remote-tracking branch 'origin/develop' into feature/scripting-cleanup
Fixed some sonar issues, fixed invalid working directory test. Fixes #145
Merge pull request #158 from NLeSC/feature/scripting-cleanup

Feature/scripting cleanup