Improved usage of coregistration algorithm (but not algorithm itself)
Create README.md
(5) Modified the slider to update the slice images while it's being dragged; Modified the mask overlay code to not use a contour (runs a lot faster); Fixed a bug with the bounding box while segmenting the lungs or calculating SNR (it was not being deleted properly); Made many changes to the updateImagePanels code; Fixed a bug with the slider where the number of slices depended on the number of lung and body slices (it now depends on the number of slices in both panels instead)
Merged with master (updates to the heterogeneity code)
Merged with master (updated CheckForUpdates code).
Removed the distribution plots during segmentation.
Fixed the load patient function (could not load any saved patient data because the naming convention was changed).
Fixed an error when segmenting the lungs using an empty image or empty ROI.
(2) Modified files using maskOverlay to display the image manually using imagesc; Made small changes to the messages during coregistration.
(3) Added number labels to coregister_landmarks when choosing landmarks; Moved the GUI code for the lung segmentation and SNR to a new function "updatePanelOverlay". The purpose of this was to fix errors by many different functions competing to update the image panels. This function can be used whenever temporary modifications need to be made to the image panels, and should hopefully make it easier to add features in the future; Improved maskOverlay performance and prevented possible crashes.
Merged with tom (updated landmark coregistration code).
Fixed code formatting (indents) only.
Merged master into tom
Changed the coregistration to use the apply / apply all buttons.
Made the pop-up window showing the coregistration more informative.
Disabled the slider when getting points during the landmark coregistration.
Changed viewCoregistration to run faster and not use imshowpair.
Rounded bodymask values after coregistration (the transform caused there to be decimal numbers in the mask).
(2) Added the ability to see the lung images overlaid on the body images (called "Overlay" in the "Left Panel" / "Right Panel" menu options); Added a temporary automatic image registration in the file named "coregister_steven.m". This function will be called from the "Coregister (auto)" menu option until Tom's automatic coregistration algorithm is working.
Added lung parameter GUI