Merge pull request #1 from RoanKanninga/master

test
Merge branch 'testing' of https://github.com/molgenis/systemsgenetics
Merge pull request #17 from PatrickDeelen/master

Update genotype reader and imputaton tool
Removed default parrallel tekst read in in DoubleMatrixDataset

Minor: added java doc to Normalizer correlation and checked PCA code.
Updated README.md help to install local jars
Merge branch 'master' of https://github.com/molgenis/systemsgenetics.git
Merge pull request #18 from PatrickDeelen/master

First implementation of variantQc genotype data
Merge branch 'master' of https://github.com/molgenis/systemsgenetics.git
Updated DoubleMatrixDataset, Speed up and added test for correlation
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
Merge pull request #19 from Bonder-MJ/master

Updated DoubleMatrixDataset and correlation
Merge branch 'master' of https://github.com/molgenis/systemsgenetics.git
Merge pull request #20 from PatrickDeelen/master

Implement variant hwe and callrate inc tests
Merge branch 'master' of https://github.com/molgenis/systemsgenetics.git
- Initial version of TriTyperGenotypeData reader (untested)
Merge pull request #22 from harmjanwestra/master

Initial version of TriTyperGenotype Data
Fixes in ReadOnlyGeneticVariant. Starting with alleles=null had some errors