cmake: move run.sh into script dir

v1: add missed " "

v2: create local variable in function
cmake: use install_executable for mcf_extract and mfc_upload_cli

fixes #428
Merge pull request #433 from karolherbst/bug428

fix Bug428
rename mfc_upload_cli to mcf_upload_cli since the binary says "MCF".
Merge pull request #437 from matthiaskrgr/MCF

rename mfc_upload_cli to mcf_upload_cli since the binary says "MCF".