Merge branch 'master' into devel
Reduced bloat code in the process of tabulating blocks and also added the ability for the HybRIDS function that figures out triplet indexes from user selections to accept the selection "ALL"
Altered block dating function to use a different method than the old looping one.
suppressed progress bar
Altered duplication detection process

Now the duplication detection process uses the ape function dist.dna to
very rapidly compute a matrix of pairwise raw distances, we then simply
find the ones that are equal to 0 - indicating duplicate pairs and we
remove one of the pairs from the set of sequences. This will hopefully
be faster than the previous method.
code error correction
Added option to force dating of non-significant blocks anyway
Corrected error in new dating bypass option
Cleaned up some code and simplified things
Major Bugfix in the dating function in how sequences are passed to be dated
Merge branch 'devel'