Merge pull request #10 from pavanvidem/deseq2

DESeq2: plot names added, made specific analysis as default
Merge pull request #11 from pavanvidem/deseq2

Added matrix_helper.py; Included independent filtering; P-value distribu...
add macs2 wrapper from Quang Trinh, task is to split them in separated tools and merge it back to https://github.com/modENCODE-DCC/Galaxy
remove unused function
add todo item
rename wrapper to reflect the new function
Merge branch 'master' of https://github.com/bgruening/galaxytools
change atlas definition
add new unstable version of atlas
Merge branch 'master' of https://github.com/bgruening/galaxytools
Merge branch 'master' of https://github.com/bgruening/galaxytools
migrate macs wrapper to cheetah syntax and split the tools in distinct wrappers
style fix
add new subprogramm from macs2
use latest masc2 from pypi
Merge pull request #12 from pavanvidem/deseq2

biomaRt annotations option added
Merge pull request #13 from pavanvidem/deseq2

All vs all option removed. New user interface
add rjson
style fixes
add advanced user input validation checks