On Wed, Aug 28, 2013 at 08:54:41AM -0700, mr-c wrote:
> > @@ -21,7 +21,7 @@ AUX_PROGS=#ht-diff
> >  CORE_OBJS= error.o khmer_config.o thread_id_map.o trace_logger.o perf_metrics.o ktable.o
> >  PARSERS_OBJS= read_parsers.o
> >  
> > -all: $(ZLIB_OBJS) $(BZIP2_OBJS) $(CORE_OBJS) $(PARSERS_OBJS) hashtable.o hashbits.o subset.o counting.o test aligner.o scoringmatrix.o node.o kmer.o
> > +all: $(ZLIB_OBJS) $(BZIP2_OBJS) $(CORE_OBJS) $(PARSERS_OBJS) hashtable.o hashbits.o subset.o counting.o test read_aligner.o
> 
>

I'm not sure I'm grokking the context in the Makefile, but these should
probably be in CORE_OBJS instead of explicitly on the 'all' target.

--t
-- 
C. Titus Brown, ctb@msu.edu