Merge branch 'release/0.13.6' of github.com:SeqWare/seqware into release/0.13.6
Adding a util to help with base name determination
Small modification so the name does not use a incorrect character
Merge branch 'feature/SEQWARE-1400_continued_oozie_improvements' of https://github.com/SeqWare/seqware into feature/SEQWARE-1400_continued_oozie_improvements
Merge branch 'feature/SEQWARE-1400_continued_oozie_improvements' of github.com:SeqWare/seqware into feature/SEQWARE-1400_continued_oozie_improvements
Just adding some placeholds to the doc, some debug messages that will need to be removed
Merge branch 'feature/SEQWARE-1400_continued_oozie_improvements' of github.com:SeqWare/seqware into feature/SEQWARE-1400_continued_oozie_improvements
Merge branch 'feature/SEQWARE-1400_continued_oozie_improvements' of github.com:SeqWare/seqware into feature/SEQWARE-1400_continued_oozie_improvements
Added a new method for file path parsing
Working on enhancements to test program for QE
Working on new feature for ProvisionFiles for use with JavaWorkflows
Merge branch 'feature/SEQWARE-1400_continued_oozie_improvements' of github.com:SeqWare/seqware into feature/SEQWARE-1400_continued_oozie_improvements
Merge branch 'feature/SEQWARE-1400_continued_oozie_improvements' of github.com:SeqWare/seqware into feature/SEQWARE-1400_continued_oozie_improvements
Adding hdfs
Working on HDFS support, seems like I'm missing changes from last night!
Fix for tag fields that include the ID field verbatim.

Also, a development dependency to match the seqwarevm
Merge branch 'feature/SEQWARE-1400_continued_oozie_improvements' of https://github.com/SeqWare/seqware into feature/SEQWARE-1400_continued_oozie_improvements
Working on output-file support
Merge branch 'feature/SEQWARE-1400_continued_oozie_improvements' of github.com:SeqWare/seqware into feature/SEQWARE-1400_continued_oozie_improvements

Conflicts:
	seqware-common/src/main/java/net/sourceforge/seqware/common/util/filetools/ProvisionFilesUtil.java
	seqware-pipeline/src/main/java/net/sourceforge/seqware/pipeline/modules/utilities/ProvisionFiles.java
Merge branch 'feature/SEQWARE-1400_continued_oozie_improvements' of github.com:SeqWare/seqware into feature/SEQWARE-1400_continued_oozie_improvements