changed script so that it does not use the num_alignments flag (broken)
fixed error in the formatting of the filepath of log_path that caused the script to output the log into a different file instead of appending the command log of the ionchannel folder
added a script to format the ciona fasta and a script to run the octopus fished x human proteome
annotated variables in fam.fasta.creator... and created cgs.create.new.headers...
the script now can correctly parse the proteome file and add it to a dictionary.
cgs.create.new.headers.13.07.16 works