skipfish: depends on pcre

Closes #18096.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
git-flow-avh 1.5.0

Closes #18084.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
gcutil 1.7.1

Closes #18086.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
povray: link to boost-thread

Fixes #18068.
Closes #18073.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
sphinx: clean up mysql/postgres handling
Open-mpi: 1.6.4 and devel 1.7rc7

* Stable update to 1.6.4
* Add devel version 1.7rc7, which passes tests when built by Clang. So
  only fail with clang when building stable versions.

Closes #18112.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
ROOT 5.34.05

This commit updates the formula to install the ROOT data analysis
framework developed by CERN.  ROOT is widely used in the particle
physics community, both inside and outside of CERN.

Closes #17988.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
cpanminus 1.6001

Closes #18110.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
vim 7.3.843

Closes #18109.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
highlight 3.12

Closes #18106.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
ruby 2.0.0-p0

Closes #18054.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
lftp 4.4.4

Closes #18117.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
libgpg-error 1.11
ruby-build 20130227

Closes #18122.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
ruby: use superenv

env :std was added to this formula without a comment as to why it is
needed, and there appears to be nothing on the issue tracker. Having
used a superenv-built ruby without issue for a few days I am assuming it
was a mistake.

If it causes problems we can either fix them or re-add env :std with
appropriate documentation.
groonga 3.0.1

Closes #18125.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
gnutls 3.1.9

Closes #18126.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
libsoup: add depends_on pkg-config

also disable TLS check, since we provide gnutls

Fixes #18124.
Closes #18127.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
pixie: add required X11 dependency.

see https://gist.github.com/fish2000/5042119

Closes #18103.

Signed-off-by: Mike McQuaid <mike@mikemcquaid.com>
jpeg-turbo: add libjpeg-turbo alias.

References #18113.