Rename calNoAverageCesaro*.m files

ND stands for numAtom*D (where D = Diffusion const)
sdD stands for spatial-decomposed D

	renamed:    calNoAverageCesaroEC.m -> calNoAverageCesaro-ND.m
	renamed:    calNoAverageCesaroEC-sd.m -> calNoAverageCesaro-sdD.m
Rename plot(SD)NoAverageCesaro-fit-ave.m to fitAveNoAverageCesaro-*.m

	renamed:    plotNoAverageCesaro-fit-ave.m -> fitAveNoAverageCesaro-ND.m
	renamed:    plotSDNoAverageCesaro-fit-ave2.m -> fitAveNoAverageCesaro-sdD.m
Update .gitignore for .nat*
Add links in bin (they were mistakenly ignored)
Reconstruct some naming conventions for variables

vAutocorr -> autoCorr
vCorr -> crossCorr
ex. use NDAutocorr and sdD instead of ecAutocorr and D

	modified:   octave/calNoAverageCesaro-ND.m
	modified:   octave/calNoAverageCesaro-sdD.m
	modified:   octave/fitAveNoAverageCesaro-ND.m
	modified:   octave/fitAveNoAverageCesaro-sdD.m
Add numAtom to the outputs of oneTwoDecompose and spatialDecompose

For the three files:
oneTwoDecompose.f90 spatialDecompose.f90 spatialDecompose_mpi.f90