maven branch

git-svn-id: https://svn.code.sf.net/p/snpeff/code@1 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b


git-svn-id: https://svn.code.sf.net/p/snpeff/code@2 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b


git-svn-id: https://svn.code.sf.net/p/snpeff/code@3 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b


git-svn-id: https://svn.code.sf.net/p/snpeff/code@4 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b


git-svn-id: https://svn.code.sf.net/p/snpeff/code@5 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b


git-svn-id: https://svn.code.sf.net/p/snpeff/code@6 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
maven format

git-svn-id: https://svn.code.sf.net/p/snpeff/code@7 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
Moved from CVS and mavenified

git-svn-id: https://svn.code.sf.net/p/snpeff/code@8 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
Moved from CVS and mavenified

git-svn-id: https://svn.code.sf.net/p/snpeff/code@9 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
Update from CVS site

git-svn-id: https://svn.code.sf.net/p/snpeff/code@10 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
Moved changed from CVS

git-svn-id: https://svn.code.sf.net/p/snpeff/code@11 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
Initial move form CVS

git-svn-id: https://svn.code.sf.net/p/snpeff/code@12 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
Enabled output by default.

git-svn-id: https://svn.code.sf.net/p/snpeff/code@13 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
First SVN commit, I hope I don't screw something up

git-svn-id: https://svn.code.sf.net/p/snpeff/code@14 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
Added dbNSFP support

git-svn-id: https://svn.code.sf.net/p/snpeff/code@15 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
Added more debugging details

git-svn-id: https://svn.code.sf.net/p/snpeff/code@16 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
Prevent jre problems between different vendors.

git-svn-id: https://svn.code.sf.net/p/snpeff/code@17 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b


git-svn-id: https://svn.code.sf.net/p/snpeff/code@18 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b


git-svn-id: https://svn.code.sf.net/p/snpeff/code@19 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
Fixed bugs
Added index for random chromosome ordering.

git-svn-id: https://svn.code.sf.net/p/snpeff/code@20 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b