Merge branch 'master' of https://github.com/chapmanb/cloudbiolinux
Remap debian packages not available from latest ubuntu list. Thanks to Olivier. fixes #57
Fix VEP download problems under certain firewalls using FTP_PASSIVE. Thanks to Jeev for the problem report
Fix for canned responses to configure packages as they are being installed (postfix specifically)
Update GATK, Picard and snpEff to latest versions. Update GATK bundle downloads to latest 2.3 release.
Update pointer to installed genome libraries in new snpEff configuration files
Support flavor customization when installing CloudMan; remove tntnet server package when cleaning up an image
Merge branch 'master' of git://github.com/chapmanb/cloudbiolinux
Install development version of cloud-init package because of a bug in earlier versions of cloud-init and newer versions of boto, which prevented ssh access to a created instance
Merge branch 'master' of github.com:chapmanb/cloudbiolinux
Include uuid development library required for perl installs
Update bowtie2 to latest version
Fix spelling error and add some documentation to
_render_config_file_template and related function _extend_env.
Provide install target for GATK gsalib R library
Replace references to outdated env.galaxy_base with env.galaxy_home
Fix typo
Simplify Galaxy cloning method
Remove mdadm package from CloudMan's dependency list
Add a bunch of existing configuration options and documentation about each in the main fabricrc.txt
Fix typos