XSD schema for SBGN PD, a sample and an unit test.
Add a Python based documentation generator, which requires libxml2 and libxlst.
Clone support + completed the sample SBGN diagram.
Added the graphics project - graphic rendering of the XML
Changed the graphics.xsd schema to allow using as a reference another element, different than the parent one
Started the dectin-1 sample.
Model was simplified by removing some redundant constructs and by transformation of some element items to attributes.
Samples were modified accordingly.
Finished the dectin1 sample. Also, the prefix of the "unit of information" node is now an attribute.
Changed the DC-Thera extension according to the discussion from 22rd. of December.
Added a sample of annotation with the custom DC-Thera extension for Dectin-1 gene.
Corrected the errors that were preventing compilation (xsi types, location of documentations,etc)
Renamed some Java field names, though jxb:property annotation.
Extended the test, now the IDs are checked for uniqueness.
Updated generated documentation
First version of the converter and of the checker.
Bug fixes and enhancements for the SBGN check.
Add TLR3 (by Enrica Calura)
Update TLR3 description. It will be later moved to pathways/
Multiple EntrezGeneID allowed.
Added Graphml schema
More unit tests for the checker plus some basic GraphML conversion of a SBGN model.
Added new schema constrains and corrected TLR3
Issue with the cyclic references corrected in the validator. Also, added unit test to detect this.
Fixed group graphical representation in GraphML.
some IDs corrected on TLR3.