bam_filter and stringent_genotyping steps and filters for team 112 Plasmodium pipeline
BAM filtering and stringent genotyping pipeline, initial check-in
fix
vcf file size check
Variation Filtering Pipeline coding_and_regions filter, initial check-in
variation filtering pipeline, coverage filter, initial check-in
VFP, min_alt filter, initial check-in
VFP, biallelic filter, initial check-in
VFP, monoallelic filter, initial check-in
VFP het_uniq filter, initial check-in
VFP stats script 1, initial check-in
VFP stage 1, initial check-in
streamlining
misc
VFP stage 2 low_missingness filter, initial check-in
misc fixes
VFP, stats hyperhet, initial check-in
misc fixes
VFP stage 2, initial check-in
stages 1 and 2 now complete