Took care of and removed all remaining TODO's and added some new configuration files for testing BodgeIt and JPetStore, one for testing when password guessing is on and one for when it is off. Configuration files are still needed for DVWA, and right now none of the configuration files play around with varying the completeness or time gap, so we need additional configuration files to exercise those options. Also, JPetStore and BodgeIt both require that the test user be registered before the test can be run, so make sure to register the test user before running these tests.