Remove optimizations from fileparser because they seem to be broke
Change start_run_job into two commands

There is now a base run_job command that takes a gjf and job string
for input. The old start_run_job has now been replaced with
run_standard_job.
Add Get Jobs to upload

This allows creating jobs based off uploaded file names. Along with
this it is also possible to upload gjf files and generate the job files
and post them to the supercomputers.
UX fix to make Gordon the default cluster