uFormatBase.h: corrected typo in length

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
Makefile: Added -fPIC in CFLAGS for python wrapping

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
SAM parser support for deprecated GO tag
Changed every Lenght for Length

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
Merge branch 'master' of github.com:anordell/class
Corrected type in Length in unit tests

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
uFormatBase.h: returnOverlapping will no longer return overlap is the objects are not on the same chromosome

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
test_uFormatInherit.cpp: Added some tests for returnOverlapping function

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
returnMerge will no longer work when two regions are not on the same chromosome

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
test_uFormatInherit.cpp: Function name was not correctly spelled

Signed-off-by: Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>
uParserSam.cpp: Comment lines (@CO) will now longer cause the parser to throw an uParser_invalid_Sam_header error

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
Minor changes to Lenght
Minor changes to printStats
utility.h: corrected type (CENTRE -> CENTER)

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
Merge branch 'master' of github.com:anordell/class
Minor bug fixes and comments added in uFormatExperiment
get SubsetCount will know return 0 if subsetting on an scaffold that does not exist.
Fixed getSubsetCount test for Experiment, no longer expects a throw
uFormatChrom.h: Added an overloaded getOverlapping function using a uBasicNGS as the comparison

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
Removed Swig defines
Merge branch 'master' of github.com:anordell/class