first reorganiztion
directory reorganization
reorganization
reorganize dir
init files
cleaning more of the directory
cleanued up results dir
reorg dirs
cleaned the results dir and muved it under doc
removed deprecteded files
starting cleanup of examples
outdated developments will be removed or merged into newer version
added the cmd3 code
added path management that hopefully works
bumping up version to 4
adding a simple one level for loop
fixing the path
fixing the dirs and some tries with optparse, yet -b error is there
rm the setup.py that caused the -b
corrected the readme