Fixes in control scripts

* 'refine' field should have been 'ref'
  Otherwise it is unrecognised as an option when used as command line
  input!

* Add plot of error vs time to parse
Throw errors on unrecognised command line args when using MyCliArgs class
Add ability to just update info files to check_jacobians

(and fix for python2)
Add output of driver used to info files