app.chain.SegmentEvaluation: removing deprecated trueCount
app.nlp.ner: removing deprecated SpanNerLabel, replacing it with Conll2003SpanNerLabel
app.nlp.pos.POS1: removing deprecated pseudo-constructor which was never used and should have been deleted in the first place
app.nlp.ner: removing deprecated ChainNerLabel
app.nlp.token: Removing deprecated sentencePosition and indexInSentence (why wasn't this done with a rename in the first place?)
app.nlp.strings: removing unused deprecated segmenter
app.topics.lda: removing deprecated methods
TensorVar: removing deprecated tensor method
CollapsedGibbsSampler: removing method export() which is deprecated and does nothing
DiscreteVariable: remove MaximizeDiscrete.maxIndex, which was deprecated
Factor2: removing deprecated method valueScores\{1,2\}
util: Removing ClasspathUtils, which is subsumed by ClasspathURL
util.Cubbie: removing deprecated _rawGet
fixing test errors
Merge pull request #17 from alextp/clean-deprecations

Clean deprecations