mtl 4.0.9486

Closes #362
gmap-gsnap 2013-10-03
sratoolkit 2.3.3-4
suite-sparse: Update the sha1
Revert "suite-sparse: Update the sha1"

This reverts commit 05b80fd0d3f033f2c6db1262b0a46bc3b187c25a.
Closes #373
R 3.0.2

Announcement at https://stat.ethz.ch/pipermail/r-announce/2013/000567.html

Announced md5 fingerprint (f9a8374736e7650e4848f33e2e3bbee3) checked
and replaced by sha1.

Closes #357
rml-mmc: simplify finding smlnj

Closes #367.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
trinity: Fails with clang build 500