Added genotype aligner step + Other minor changes
corrected typo in
make output of liftover more clear
removed root. It should be in an exra file
removed root. It should be an extra file
removed root. It should be an extra worksheet
removed debugging output
changing the location of resulted files in order to compy with rest imputation workflows
removed $outputFolderChr
Merge pull request #93 from freerkvandijk/master

Updates and bugfixes Lifelines genotype pipeline
Added sample spliting in imputation
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
changed return code for align with align with reference
Merge pull request #88 from kantale/master

Added genotype Aligner step
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Several updates in-house NGS alignment pipeline compute5