fix setup.py for new versions of Cython
use double (not long double) for compatibility
change defaults for static values
robustify convert and split functions, remove experimental code
update readme
ignore output files
update readme
bugfix: plot of length histograms in split
fix github url in setup.py
udpate readme
remove test data from repo (use download option instead)
mv readme so it gets picked up by sdist
Allow user to specify phylogeny from cmd line
readme -> rst and updates about phylogeny
ignore more setup.py extras
typo in the readme
readme
readme
readme
Allow user to adjust chunksize