Preliminary work on automatically learning the event structures.
Saving and loading a basic event structure analysis works.
For non-negative incorrect predictions for non-negative examples, a
false negative instance was missing from the micro-averaged
F-score.
Filtering edge examples based on the structure analyzer seems to work,
but at least for the EPI task, there appear to be in the devel set
Theme-edges that do not correspond to rules learned from the train set.
Working on integrating relations and events in the ST format data
structures.
More work on integrating relations and events in the ST format data
structures.
Removed redundant initializations.
Removed commented out toSTFormatSentences-function and testing code.
Support for relations, modifiers and sites.
GE'11 devel set roundtrip conversion works now but sites are still
problematic.
Working on generalizing the ST format processing code and making it
object oriented.
ixml structure sketch
GENIA conversion seems to work.
The new Site-argument representation works for all but one event in the
GE11 devel set.
Equiv processing seems to work again.
Can now take multiple input files.
Added structure analysis steps to detectors.
Limit siteOf to point to arguments that have a Protein target.
Using the source file (a1) instead of the entity type (Protein) to limit
valid siteOf objects is at least a bit less hardcoded approach.
Detection of relation interactions works now. Removed site-analysis,
which is no longer applicable for the updated ST-format classes.