update to new lange patches
Signed-off-by: Justin Lecher <jlec@gentoo.org>
sci-chemistry/rosetta: Add patches from www.csrosetta.org

Package-Manager: portage-2.2.0_alpha179
sci-chemistry/rosetta: Fix: Ebuild calls die in a subshell

Package-Manager: portage-2.2.0_alpha179
Copied old Condor files, moved to sys-cluster/htcondor
Created htcondor-8.0.0.ebuild
Created manifest
Explicit cmake-utils flags have to be the correct case
Hopefully improved htcondor ebuild

Added to CMake flags
Added versions to dependencies
Apparently we can't use >= with -rN atoms - using the next minor version
number instead.
cmake-utils_use_has, not _use_have...
Added CMAKE_MIN_VERSION
Looking at CMake Cache suggests it also depends on LDAP
HAVE_DMTCP is a path, not a boolean
Merge branch 'master' into jlec

* master: (120 commits)
  add missing masks for live ebuilds
  dev-python/healpy: Initial import
  dev-java/jhealpix: Initial import
  sci-astronomy/healpix_idl: Initial import
  sci-astronomy/healpix_cxx: Initial import
  sci-astronomy/chealpix: Initial import
  sci-biology/twinscan: Bump to EAPI=5 and fix license
  sci-biology/ssaha2-bin: Version Bump; restrict license; add QA_PREBUILT for binaries
  sci-biology/smalt-bin: Version Bump; restrict license; add QA_PREBUILT for binaries
  sci-biology/sequin: Version BUmp; restrcit license; add QA_PREBUILT for binaries; install html files into sys path
  sci-biology/quicktree: Bump to EAPI=5 and fix license
  sci-biology/gap2caf: Bump to EAPI=5 and fix license; make it build with eautoreconf
  sci-biology/erpin: Bump to EAPI=5 and respect FLAGS / AR
  sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS
  sci-chemistry/shiftx2: Respect FLAGS
  Enhanced the sci-chemistry/shiftx ebuild. Still needs some love for the emake part (portage complains about LDFLAGS not respected), but should work.
  sci-chemistry/pymol-plugins-psico: Bump to EAPI=5 and distutils-r1.eclass
  sci-chemistry/smmp: Bump to EAPI=5 and python-r1.eclass
  sci-chemistry/specView: Bump to EAPI=5 and python-single-r1.eclass
  sci-chemistry/pyquante: Bump to EAPI=5 and distutils-r1.eclass
  ...
A couple more tweaks
Patch that will hopefully solve problems with linker not finding dlopen symbol
Wrote a src_install function based on code copied from old ebuilds
Deleted old ebuilds now they aren't needed to copy code from
Fixed repoman complaints
Use CMAKE_INSTALL_PREFIX - hopefully fix sandbox violations