[FIX] fix build error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11739 6adb6e08-d915-0410-941f-83917bcadc18
Merged bug fix (11739:11740) from Release1.11.1 to trunk


git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11741 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] enabled setting of inclusion charges for featureXML input

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11742 6adb6e08-d915-0410-941f-83917bcadc18
[BUILD] try to fix Windows link issue

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11743 6adb6e08-d915-0410-941f-83917bcadc18
[FIX,DOC] enhanced documentation, removed unused parameters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11744 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] fix out-of-bound read/write

- fix access to array of size 255
- fix missing bracket

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11745 6adb6e08-d915-0410-941f-83917bcadc18
[DOC] documentation and NOP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11746 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] patch indexed mzML

- add copy-constructor and filename

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11747 6adb6e08-d915-0410-941f-83917bcadc18
[FEATURE] add OnDisc MSExperiment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11748 6adb6e08-d915-0410-941f-83917bcadc18
[FEATURE] add fill data option

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11749 6adb6e08-d915-0410-941f-83917bcadc18
[FEATURE] add LowMem PeakPicker (random access)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11750 6adb6e08-d915-0410-941f-83917bcadc18
[TEST] LowMem PeakPicker (Random Access) tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11751 6adb6e08-d915-0410-941f-83917bcadc18
[FEATURE] added parameter flag for feature intensity normalization in FeatureBasedLP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11752 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] fix test and windows compile (hopefully)

- fix test
- create default instance of OnDiscMSExperiment with empty file -> need
  to catch that case in the constructor and not load the file
- remove dead code from LowMemPeakPickerHiRes_RandomAccess.C

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11753 6adb6e08-d915-0410-941f-83917bcadc18
[BUILD] allow the addition of external libraries to pyOpenMS

- allow to compile and link external libraries with pyOpenMS

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11754 6adb6e08-d915-0410-941f-83917bcadc18
[DOC] Valgrind suppression files

run for example as:

valgrind --tool=memcheck --suppressions=./tools/valgrind/openms_external.supp --suppressions=./tools/valgrind/openms_internal.supp --leak-check=full --show-reachable=yes --gen-suppressions=all --leak-check=yes ./bin/OpenMSInfo

note that these files are based on the current warnings and it should be
checked whether we can safely ignore them or not

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11755 6adb6e08-d915-0410-941f-83917bcadc18
[BUILD] MSVS fix (remove DLL Import/Export for template class)

- remove OPENMS_DLLAPI for template class

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11756 6adb6e08-d915-0410-941f-83917bcadc18
[PARAM] exposed additional options for Mascot export

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11757 6adb6e08-d915-0410-941f-83917bcadc18
[FIX-#609] fixed some problems with protein modifications in MascotAdapterOnline

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11758 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] initialized some uninitialized variables in constructor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11759 6adb6e08-d915-0410-941f-83917bcadc18