made some fairly major structural changes to get this running operationally for the last step of the project (needs a bit more work on the particle filter update function)
Myrge branch 'master' of https://github.com/EcoForecast/PhenologyForecast

trying to resolve conflicts!
Conflicts:
	Operations.R
	get.site.data.R
making some fairly major changes to make the forecast operational. the particle filter function for the "update forecast" step needs a bit of work still (this is the new  update.particle.filter.forecast function)
Merge pull request #46 from dgianotti/master

Fixed check.for.complete.SS.model bug
Merge pull request #47 from dgianotti/master

Fixed bug in run.SS.model
Merge pull request #48 from dgianotti/master

Cleaned up run.SS.model, no longer depends on HistoricalData (can remove that from the project at this point).
Merge pull request #11 from EcoForecast/master

Updating with Diana's changes to PF code