Fixed an issue with loading controllers

Controllers that are overwritten with config layouts are not loaded correctly. For example, the Enterprise_Cms module uses this:

    <admin>
        <routers>
            <adminhtml>
                <args>
                    <modules>
                        <enterprise_cms before="Mage_Adminhtml">Enterprise_Cms_Adminhtml</enterprise_cms>
                    </modules>
                </args>
            </adminhtml>
        </routers>
    </admin>

This causes "Enterprise_Cms_Adminhtml" to be saved as the module, but mageploy will fail to load that, since there isn't actually a module called "Enterprise_Cms_Adminhtml".

The patch addresses that issue, though there may be better ways of handling the problem? I tested the fix with a couple of the built in trackers and it seemed to work fine.