mpicbg: reverted having an id in point, better do it by extension
Weka Segmentation: fixed bug on addRandomBalancedBinaryData methods that was preventing any data to be added when the mask was null.
Build checked-out modules by default again

This was desired by Stephan Preibisch and Curtis Rueden made sure
that this developer re-added the support.

There are nasty warning again, of course, because pom-fiji-submodules
is the parent of none of the submodules, yet they are all children...

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Bump IJ1 & IJ2 submodules to current ones

Required to satisfy Jorge Jenkins.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Clojure cannot be built with MiniMaven; remove it

Unless someone steps up to maintain the Clojure part of Fiji properly,
it will not be reinstated, either.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Get rid of more submodules

We should not really have all the 3rd-party as submodules; now that
we use Maven, we can easily get the source code corresponding to the
exact version of the library we use via Maven.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Adjust 'ij-plugins' after git-svn re-clone

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Adjust 'javassist' after git-svn re-clone

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Adjust the URL submodule 'mpicbg'

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Remove javassist from the submodules, too

MiniMaven cannot build it

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Also need to bump ImgLib version...

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Make sure that the Refresh Menus command stays overridden

... even after it has been called...

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Merge branch 'master' of git://fiji.sc/fiji
Add more entries to the mailmap

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Merge branch 'master' of https://github.com/fiji/fiji
Weka Segmentation: fixed bug on the number of classes passed to the classifiers. We were not passing classes with zero traces and created inconsistencies.
Add a helper script to determine the commit for a give .jar file

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Build.sh: Do not modify mtimes unnecessarily

E.g. ij-minimaven.jar *wants* to be left alone; otherwise the timestamp
check that should determine whether to download a newer version would
fail always for Jenkins (who builds several times a day).

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Build.sh: no need to list minimaven's dependencies explicitly

We use scijava-common's maven-helper that knows how to determine
dependencies by inspecting the .pom file directly.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Build.sh: force MiniMaven update when Build.sh changed

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>