Moved redundant R 'collect all' source from makefiles into src/r/collectAll.r.  Added directory src/r for all r source files. Fixed all Makefiles accordingly.
Merge branch 'master' of https://github.com/smartell/MSEdemo

Conflicts:
	demo/Makefile
	src/MSE.dat
	src/om
	src/om.cpp
	src/om.o
	src/r/MSEDemo.r