half through Danny's revisions
most of danny's revisions, just two pages that require extra work
writing tutor corrections
first chapter of fred's revisions in progress
First pass through all revisions, jesus
converted one algorithm to pseudocode
removed bib as appendix, and removed page numbers from chapters in toc, however still issue from pseudocode package
transformed random demarcator to pseudocode
improved demarcation descriptions and cleaned things up a bit
update, and added picture of tree flare
added Jukes-Cantor reference
updates
most of results added, now making tables and graphs, and testing inserting them