cc2538: clock: Fix secs update in clock_adjust()

Whole elapsed seconds are added to secs first, so only the remaining subsecond
ticks should then be subtracted from second_countdown in order to decide whether
secs should be incremented again.

Otherwise, secs is not correctly updated in some cases, typically if the bit 7
of ticks is 1. E.g., with ticks = 128 (i.e. exactly 1 s elapsed) and
second_countdown = 128, secs was first incremented as expected, then 128 was
subtracted from second_countdown, giving 0 and triggering an unwanted second
increment of secs. Or with ticks = 129 (i.e. 1 s + 1 tick) and
second_countdown = 1, secs was first incremented as expected, then 129 was
subtracted from second_countdown, giving 128 and missing a second increment of
secs that should have occurred because second_countdown wrapped around.

Signed-off-by: Benoît Thébaudeau <benoit.thebaudeau@advansee.com>
cc2538: lpm: Fix energest context when aborting lpm_enter()

In one of the abort cases in lpm_enter(), the energest context has previously
been set to LPM, so the abort code needs to set it back to CPU.

Signed-off-by: Benoît Thébaudeau <benoit.thebaudeau@advansee.com>
cc2538: lpm: Let system clock transitions complete before further changes

As a matter of precaution, always make sure that pending system clock
transitions are complete before requesting a new change of the system clock
source.

Signed-off-by: Benoît Thébaudeau <benoit.thebaudeau@advansee.com>
cc2538: lpm: Speed up the transition to the 32-MHz XOSC after wake-up

As recommended by the CC2538 User's Guide, set SYS_CTRL_CLOCK_CTRL.OSC_PD to 0
before asserting WFI, and set it to 1 after the system clock is sourced from the
32-MHz XOSC following wake-up. This allows to automatically start both
oscillators upon wake-up in order to partially hide the 32-MHz XOSC startup time
by the 16-MHz RCOSC startup time.

Signed-off-by: Benoît Thébaudeau <benoit.thebaudeau@advansee.com>
cc2538: lpm: Fix RTIMER_NOW() upon wake-up

When returning from PM1/2, the sleep timer value (used by RTIMER_NOW()) is not
up-to-date until a positive edge on the 32-kHz clock has been detected after the
system clock restarted. To ensure an updated value is read, wait for a positive
transition on the 32-kHz clock by polling the SYS_CTRL_CLOCK_STA.SYNC_32K bit,
before reading the sleep timer value.

Because of this RTIMER_NOW() fixup, lpm_exit() has to be called at the very
beginning of ISRs waking up the SoC. This also ensures that all clocks and
timers are enabled at the correct frequency and updated before using them
following wake-up.

Without this fix, etimers could sometimes (randomly, depending on timings)
become ultra slow (observed from 10x to 40x slower than normal) if the system
exited PM1/2 very often. This issue occurred more often with PM1.

Signed-off-by: Benoît Thébaudeau <benoit.thebaudeau@advansee.com>